Uniprot Translate, The UniProt knowledgebase is a large resource of protein sequences and associated detailed annotation. I have worked on a transcriptome and I have got UniProt Id from blastx output (near 20K uniprot accessions). The tool supports conversion of the following ID types: PubMed: numeric PubMed ID, e. This replaces the services previously provided and you might have to update any workflow or scripts Arguments to Character or symbol: target ID type. [1] Sie UniProtKB/Swiss-Prot is the expertly curated component of UniProtKB (produced by the UniProt consortium). To learn more, please watch this short video on the right. 1. In addition, several ID translation tools also offer this service in a high-throughput fashion [2 - 6] (supplementary file 1), based either on Entrez Gene or on the UniProt/PIR mapping databases [7]. Please note that UniProt stands for: the Universal Protein Resource; this UniProt resource is comprehensive and is focused on proteins: protein sequence and annotation data. from Character or symbol: source ID type.

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